PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0036s0109.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family NF-X1
Protein Properties Length: 1418aa    MW: 153924 Da    PI: 8.19
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0036s0109.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X116.81.5e-05570588119
             zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                          CG+H+C+++CHeG C  C+
  Mapoly0036s0109.1.p 570 CGRHSCSRICHEGSCELCK 588
                          ***************9886 PP

2zf-NF-X117.11.2e-05634651118
             zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                          CG+H Cq++CH+GpC++C
  Mapoly0036s0109.1.p 634 CGNHECQEKCHPGPCGEC 651
                          ****************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579034.12E-5396466IPR011011Zinc finger, FYVE/PHD-type
PROSITE profilePS500168.662404468IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590407465IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500898.963407466IPR001841Zinc finger, RING-type
CDDcd060087.33E-9499553No hitNo description
SMARTSM004380.093515533IPR000967Zinc finger, NF-X1-type
PfamPF014220.78516532IPR000967Zinc finger, NF-X1-type
CDDcd060084.95E-13560608No hitNo description
SMARTSM004380.0015570589IPR000967Zinc finger, NF-X1-type
PfamPF014221.7E-4570588IPR000967Zinc finger, NF-X1-type
CDDcd060088.95E-11624667No hitNo description
SMARTSM004382.7E-4634653IPR000967Zinc finger, NF-X1-type
PfamPF014223.8E-4634651IPR000967Zinc finger, NF-X1-type
CDDcd060084.47E-14688735No hitNo description
SMARTSM004389.0E-4698717IPR000967Zinc finger, NF-X1-type
PfamPF014220.073700716IPR000967Zinc finger, NF-X1-type
SMARTSM00438220763794IPR000967Zinc finger, NF-X1-type
PfamPF0142232763774IPR000967Zinc finger, NF-X1-type
CDDcd060089.33E-10792844No hitNo description
PfamPF014220.042796819IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0043802821IPR000967Zinc finger, NF-X1-type
CDDcd060084.24E-5849897No hitNo description
SMARTSM004380.0069859877IPR000967Zinc finger, NF-X1-type
PfamPF0142213859876IPR000967Zinc finger, NF-X1-type
SMARTSM004386.6912946IPR000967Zinc finger, NF-X1-type
PfamPF014220.11912927IPR000967Zinc finger, NF-X1-type
CDDcd060082.12E-5944993No hitNo description
PfamPF01422140949975IPR000967Zinc finger, NF-X1-type
SMARTSM004380.018955976IPR000967Zinc finger, NF-X1-type
SuperFamilySSF827089.02E-710641161IPR001374R3H domain
PROSITE profilePS5106110.73410831149IPR001374R3H domain
PfamPF014241.9E-510841145IPR001374R3H domain
Gene3DG3DSA:3.30.1370.507.1E-511081155IPR001374R3H domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1418 aa     Download sequence    Send to blast
MEDSYGNYSV GSIGGRDIAS PVVYAHPGEP GGRGDSGSRG SHGNHRGYRR GGSYQRGRNF  60
VDNRPNSHEH PQFANARRHV GGHGGGFDSI PDSPQSGDSF IGEREGRGRG VTGPLRFNSN  120
NFRGGRTVSQ DNPQDYRSYA SGESSFDGNR ERWSVSEAAP AGDSRSDDQL DVHRENQDHR  180
ISEQQRRFAE SNRFGGSRRG SGAGRGQRFN RRGSSDGSHA PQTSRRGGTS YHEVEDGRRL  240
DRGSRGRHDE NREIVVANYT NHSEDSEHGS VGLLAHLEQE IPQASSTTSN NYNRDGNWPE  300
FFGEVEYDSR PGSSSSDNVP FRENAGRVYV GDSGGGRGRR ESYRENRKAD GPSVIQGHRR  360
DNHQITGRKK AVFQADNGEA LWRAKKSEVP QLVQELEERL TRGTIECMIC YDMVGRSSPM  420
WSCGSCYAIF HLNCIKRWAR APTSTDLSVS SANHSLEGNW RCPGCQAVEL ITARDLRYNC  480
FCGQVDNPPV DHYLTPHSCG GPCKKPLDRS KTKRCNHYCT MQCHPGPCPP CSAVAPSEFC  540
PCGKKTFTRR CGEQKAISSC GDVCGRKLSC GRHSCSRICH EGSCELCKVD VNTQCFCGKK  600
HETMSCGAVE IQGNVDFEKG ILSCGSRCLK TLSCGNHECQ EKCHPGPCGE CEVSPAMLQT  660
CPCGKKKLLE LVGSGRPRIN CTDPVPTCGQ GCSKVLPCKV HVCRDLCHSG PCPPCRVPVE  720
QKCRCGSSSR SVACHVSQGN PFVGEETEGL FLCERKCGQK KSCGRHRCNN RCCPTTNGSS  780
LQDTSDRDPH DCILACGKKL RCRQHNCQER CHSGHCPPCL ESIFTELSCA CGKTSIPPPV  840
PCGTPLPSCQ EPCSFHQPCG HPATHLCHFG DCPPCTVAVT KECVGNHVLL RGVPCGSRDI  900
KCNKLCGKTR QCGLHACARA CHVPPCDNVE DASARGVKTV KNSCGQPCGA PRRDCSHTCI  960
LTCHPSAPCP DNRCKVVVTI TCGCGRISGD VPCDAGGSST SRASAETEMI LSRLPAPLQP  1020
IAQSSERTPL GQRKLSCDDE CGKLEKKRLL ADAFGVELSG DFTSGDTGAL GSEMLSEMLR  1080
RDPQWVLAVE ERFKFLLLGP KVSTLKVHVF CPMAKEKREV IYQLAERWSL SVSSAGREPR  1140
RFPIVHVTNK SKVPYTRMLS KSQLPPAGQQ TPPAFNAAVD MEPGLVVAFF DVPREVDMSG  1200
LVLRFAGECE LVWLNDKNAL AIFGDVARAA TALRRVDHTT AYKGAISVPG SAVYTSSKGA  1260
WGQAAGSSFA TKPSAKKKAV QESSWVEDAW GDDNRKSSKE QLTGAWQRKE PSIITKNPWG  1320
ALEQTRARVS DARLKGCYVS SQPSGTSQAS TKEGESSAQG ERTKPVKSTT KERGDQAGPS  1380
GASKEVSNCA TVITKSPADD SLVPQNGEKD DWERLLD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001777083.10.0predicted protein
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA9TER30.0A9TER3_PHYPA; Predicted protein
STRINGPP1S215_60V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP39501420
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1